4BJA

Globin-like protein Glb-12 from C.elegans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.181 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

A Redox Signalling Globin is Essential for Reproduction in Caenorhabditis Elegans.

De Henau, S.Tilleman, L.Vangheel, M.Luyckx, E.Trashin, S.Pauwels, M.Germani, F.Vlaeminck, C.Vanfleteren, J.R.Bert, W.Pesce, A.Nardini, M.Bolognesi, M.De Wael, K.Moens, L.Dewilde, S.Braeckman, B.P.

(2015) Nat Commun 6: 8782

  • DOI: https://doi.org/10.1038/ncomms9782
  • Primary Citation of Related Structures:  
    4BJA

  • PubMed Abstract: 

    Moderate levels of reactive oxygen species (ROS) are now recognized as redox signalling molecules. However, thus far, only mitochondria and NADPH oxidases have been identified as cellular sources of ROS in signalling. Here we identify a globin (GLB-12) that produces superoxide, a type of ROS, which serves as an essential signal for reproduction in C. elegans. We find that GLB-12 has an important role in the regulation of multiple aspects in germline development, including germ cell apoptosis. We further describe how GLB-12 displays specific molecular, biochemical and structural properties that allow this globin to act as a superoxide generator. In addition, both an intra- and extracellular superoxide dismutase act as key partners of GLB-12 to create a transmembrane redox signal. Our results show that a globin can function as a driving factor in redox signalling, and how this signal is regulated at the subcellular level by multiple control layers.


  • Organizational Affiliation

    Department of Biology, Ghent University, Ghent B-9000, Belgium.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN GLB-12266Caenorhabditis elegansMutation(s): 1 
UniProt
Find proteins for Q09514 (Caenorhabditis elegans)
Explore Q09514 
Go to UniProtKB:  Q09514
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ09514
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.181 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.44α = 90
b = 50.44β = 90
c = 245.27γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2014-05-07
    Type: Initial release
  • Version 1.1: 2015-12-16
    Changes: Database references