Download MendeleyCrystal Structure of the C-Terminal Cmp-Kdo Binding Domain of Waaa from Acinetobacter Baumannii
Kimbung, Y.R., Hakansson, M., Logan, D., Wang, P.F., Schulz, M., Mamat, U., Woodard, R.W.To be published.
4BFC
Crystal structure of the C-terminal CMP-Kdo binding domain of WaaA from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb4BFC/pdb
- Classification: TRANSFERASE
- Organism(s): Acinetobacter baumannii
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-03-18 Released: 2014-04-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.161
- R-Value Work: 0.134
- R-Value Observed: 0.135
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE | 235 | Acinetobacter baumannii | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| BME Query on BME | C [auth A], D [auth A] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.161
- R-Value Work: 0.134
- R-Value Observed: 0.135
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.37 | α = 90 |
| b = 110.37 | β = 90 |
| c = 70.34 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2014-04-02 Deposition Author(s): Kimbung, Y.R., Hakansson, M., Logan, D., Wang, P.F., Schulz, M., Mamat, U., Woodard, R.W.
Revision History (Full details and data files)
- Version 1.0: 2014-04-02
Type: Initial release - Version 1.1: 2015-04-08
Changes: Structure summary - Version 1.2: 2018-01-17
Changes: Advisory, Data collection - Version 1.3: 2023-12-20
Changes: Advisory, Data collection, Database references, Derived calculations, Other, Refinement description
