4BAX | pdb_00004bax

Crystal structure of glutamine synthetase from Streptomyces coelicolor

PDB DOI: https://doi.org/10.2210/pdb4BAX/pdb

Classification: LIGASE
Organism(s): Streptomyces coelicolor
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-09-16 Released: 2013-03-27
Deposition Author(s): Zeth, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free:
0.236 (Depositor), 0.231 (DCC)
R-Value Work:
0.206 (Depositor), 0.201 (DCC)
R-Value Observed:
0.208 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of Glutamine Synthetase from Streptomyces Coelicolor

Zeth, K.

To be published.

Macromolecule Content

Total Structure Weight: 373.83 kDa
Atom Count: 27,354
Modeled Residue Count: 3,440
Deposited Residue Count: 3,440
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLUTAMINE SYNTHETASE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	344	Streptomyces coelicolor	Mutation(s): 0 EC: 6.3.1.2
UniProt
Find proteins for Q9X958 (Streptomyces coelicolor) Explore Q9X958 Go to UniProtKB: Q9X958
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9X958
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NA Query on NA Download:Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain L [auth A] SDF format, chain M [auth B] SDF format, chain N [auth D] SDF format, chain O [auth D] SDF format, chain P [auth E] SDF format, chain Q [auth F] SDF format, chain R [auth G] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A] MOL2 format, chain M [auth B] MOL2 format, chain N [auth D] MOL2 format, chain O [auth D] MOL2 format, chain P [auth E] MOL2 format, chain Q [auth F] MOL2 format, chain R [auth G] mmCIF format, chain K [auth A] mmCIF format, chain L [auth A] mmCIF format, chain M [auth B] mmCIF format, chain N [auth D] mmCIF format, chain O [auth D] mmCIF format, chain P [auth E] mmCIF format, chain Q [auth F] mmCIF format, chain R [auth G]	K [auth A] L [auth A] M [auth B] N [auth D] O [auth D] K [auth A], L [auth A], M [auth B], N [auth D], O [auth D], P [auth E], Q [auth F], R [auth G]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Focus chain N [auth D] Focus chain O [auth D] Focus chain P [auth E] Focus chain Q [auth F] Focus chain R [auth G] Interactions & Density Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Focus chain N [auth D] Focus chain O [auth D] Focus chain P [auth E] Focus chain Q [auth F] Focus chain R [auth G]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free: 0.236 (Depositor), 0.231 (DCC)
R-Value Work: 0.206 (Depositor), 0.201 (DCC)
R-Value Observed: 0.208 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.12	α = 90
b = 113	β = 98.55
c = 194.44	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-03-27

Deposition Author(s):

Zeth, K.

Revision History (Full details and data files)

Version 1.0: 2013-03-27
Type: Initial release
Version 1.1: 2024-05-08
Changes: Data collection, Database references, Derived calculations, Other

4BAX | pdb_00004bax

Crystal structure of glutamine synthetase from Streptomyces coelicolor

Literature

Structure of Glutamine Synthetase from Streptomyces Coelicolor

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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