4AWQ

Complex of HSP90 ATPase domain with tropane derived inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.229 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Discovery of Xl888: A Novel Tropane-Derived Small Molecule Inhibitor of Hsp90.

Bussenius, J.Blazey, C.M.Aay, N.Anand, N.K.Arcalas, A.Baik, T.Bowles, O.J.Buhr, C.A.Costanzo, S.Curtis, J.K.Defina, S.C.Dubenko, L.Heuer, T.S.Huang, P.Jaeger, C.Joshi, A.Kennedy, A.R.Kim, A.I.Lara, K.Lee, J.Li, J.Lougheed, J.C.Ma, S.Malek, S.Manalo, J.C.Martini, J.F.Mcgrath, G.Nicoll, M.Nuss, J.M.Pack, M.Peto, C.J.Tsang, T.H.Wang, L.Womble, S.W.Yakes, M.Zhang, W.Rice, K.D.

(2012) Bioorg Med Chem Lett 22: 5396

  • DOI: 10.1016/j.bmcl.2012.07.052
  • Primary Citation of Related Structures:  
    4AWO, 4AWP, 4AWQ

  • PubMed Abstract: 
  • With structural guidance, tropane-derived HTS hits were modified to optimize for HSP90 inhibition and a desirable in vivo profile. Through an iterative SAR development process 12i (XL888) was discovered and shown to reduce HSP90 client protein content in PD studies ...

    With structural guidance, tropane-derived HTS hits were modified to optimize for HSP90 inhibition and a desirable in vivo profile. Through an iterative SAR development process 12i (XL888) was discovered and shown to reduce HSP90 client protein content in PD studies. Furthermore, efficacy experiments performed in a NCI-N87 mouse xenograft model demonstrated tumor regression in some dosing regimens.


    Organizational Affiliation

    Exelixis, Inc., 220 East Grand Ave., South San Francisco, CA 94080, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HEAT SHOCK PROTEIN HSP 90-ALPHAA, B230Homo sapiensMutation(s): 0 
Gene Names: HSP90AA1HSP90AHSPC1HSPCA
EC: 3.6.4.10
UniProt & NIH Common Fund Data Resources
Find proteins for P07900 (Homo sapiens)
Explore P07900 
Go to UniProtKB:  P07900
PHAROS:  P07900
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
592 (Subject of Investigation/LOI)
Query on 592

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]N-benzyl-6-[(3-endo)-3-{[(3-methoxy-2-methylphenyl)carbonyl]amino}-8-azabicyclo[3.2.1]oct-8-yl]pyridine-3-carboxamide
C29 H32 N4 O3
JXXRMCOYDPMQEY-BKFWDETESA-N
 Ligand Interaction
Binding Affinity Annotations 
IDSourceBinding Affinity
592 BindingDB:  4AWQ IC50: min: 479, max: 2800 (nM) from 3 assay(s)
Binding MOAD:  4AWQ IC50: 479 (nM) from 1 assay(s)
PDBBind:  4AWQ IC50: 479 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.229 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.324α = 70.4
b = 56.769β = 87.01
c = 57.444γ = 68.7
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-08-29
    Type: Initial release
  • Version 1.1: 2017-06-28
    Changes: Data collection