4A7P

Se-Met derivatized UgdG, UDP-glucose dehydrogenase from Sphingomonas elodea


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The Structure of Ugdg, an Udp-Glucose Dehydrogenase from Sphingomonas Elodea Atcc 31461

Rocha, J.Granja, A.T.Sa-Correia, I.Fialho, A.M.Frazao, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-GLUCOSE DEHYDROGENASEA, B446Sphingomonas elodeaMutation(s): 0 
Gene Names: ugdG
EC: 1.1.1.22
Find proteins for A4UTT2 (Sphingomonas elodea)
Explore A4UTT2 
Go to UniProtKB:  A4UTT2
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD

Download CCD File 
A, B
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Work: 0.230 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.03α = 90
b = 109.03β = 90
c = 175.813γ = 90
Software Package:
Software NamePurpose
FFFEARmodel building
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
DMphasing
RESOLVEphasing
FFFEARphasing
XFITphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-11-21
    Type: Initial release
  • Version 1.1: 2017-07-12
    Changes: Refinement description
  • Version 1.2: 2019-03-06
    Changes: Data collection, Derived calculations, Experimental preparation
  • Version 1.3: 2019-09-25
    Changes: Data collection, Experimental preparation, Other