Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Dihedral - D2  (3D View)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 157579.11 
• Atom Count: 10225 
• Residue Count: 1368 
• Unique protein chains: 1

4P63

CRYSTAL STRUCTURE OF DEOXYHYPUSINE SYNTHASE FROM PYROCOCCUS HORIKOSHII

• DOI: 10.2210/pdb4P63/pdb

• Classification: TRANSFERASE
• Organism(s): Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
• Expression System: Escherichia coli


• Deposited: 2014-03-21 Released: 2015-05-06 
• Deposition Author(s): Gai, Z.Q., Okada, C., Yu, J., Wakabayashi, H., Tanaka, I., Yao, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.2 Å
• R-Value Free: 0.203 
• R-Value Work: 0.166 

Literature

CRYSTAL STRUCTURE OF DEOXYHYPUSINE SYNTHASE FROM PYROCOCCUS HORIKOSHII

Gai, Z.Q., Okada, C., Yu, J., Wakabayashi, H., Tanaka, I., Yao, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Probable deoxyhypusine synthase	A, B, C, D	342	Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)	Mutation(s): 0  Gene Names: dys EC: 2.5.1.46
Find proteins for O50105 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Go to UniProtKB:  O50105

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NAD	A, D	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.2 Å
• R-Value Free: 0.203 
• R-Value Work: 0.166 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 87.280	α = 90.00
b = 89.906	β = 90.00
c = 164.829	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2014-03-21 
• Released Date: 2015-05-06 
• Deposition Author(s): Gai, Z.Q., Okada, C., Yu, J., Wakabayashi, H., Tanaka, I., Yao, M.

Revision History 

• Version 1.0: 2015-05-06
  Type: Initial release
• Version 1.1: 2018-03-21
  Type: Data collection, Database references, Derived calculations, Other, Source and taxonomy