4JNI

Crystal Structure of uPA in complex with its inhibitor 4-bromobenzylamine at pH 4.6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.254 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Halogen bonds in the design of serine protease inhibitors

Zhang, X.Jiang, L.Zhao, B.Yuan, C.Huang, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Urokinase-type plasminogen activator
U
247Homo sapiensGene Names: PLAU
EC: 3.4.21.73
Find proteins for P00749 (Homo sapiens)
Go to Gene View: PLAU
Go to UniProtKB:  P00749
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
U
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
PZH
Query on PZH

Download SDF File 
Download CCD File 
U
1-(4-BROMOPHENYL)METHANAMINE
4-BROMOBENZYLAMINE
C7 H8 Br N
XRNVSPDQTPVECU-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
U
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.254 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 114.812α = 90.00
b = 114.812β = 90.00
c = 40.926γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data scaling
HKL-2000data reduction
REFMACrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-03-19
    Type: Initial release