Download MendeleyA Journey Through the Dap Kinase Architecture
De Diego, I., Kuper, J., Lehmann, F., Wilmanns, M.To be published.
3ZXT
Dimeric structure of DAPK-1 catalytic domain in complex with AMPPCP- Mg
- PDB DOI: 10.2210/pdb3ZXT/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-08-15 Released: 2012-07-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.285
- R-Value Work: 0.216
- R-Value Observed: 0.219
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DEATH-ASSOCIATED PROTEIN KINASE 1 | A, B, C, D | 285 | Homo sapiens | Mutation(s): 0 Gene Names: DAPK1, DAPK EC: 2.7.11.1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P53355 (Homo sapiens) Explore P53355 Go to UniProtKB: P53355 | |||||
PHAROS: P53355 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P53355 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACP Query on ACP | E [auth A], J [auth B], L [auth C], M [auth D] | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER C11 H18 N5 O12 P3 UFZTZBNSLXELAL-IOSLPCCCSA-N |  | Ligand Interaction | |
| MG Query on MG | F [auth A], G [auth A], H [auth B], I [auth B], K [auth C], | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.285
- R-Value Work: 0.216
- R-Value Observed: 0.219
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 83.407 | α = 90 |
| b = 76.578 | β = 92.01 |
| c = 106.892 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2012-07-25 Deposition Author(s): de Diego, I., Lehmann, F., Wilmanns, M.
Revision History (Full details and data files)
- Version 1.0: 2012-07-25
Type: Initial release
