3ZDO | pdb_00003zdo

Tetramerization domain of Measles virus phosphoprotein

• PDB DOI: https://doi.org/10.2210/pdb3ZDO/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Measles morbillivirus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2012-11-29 Released: 2013-04-24 
• Deposition Author(s): Communie, G., Crepin, T., Jensen, M.R., Blackledge, M., Ruigrok, R.W.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.07 Å
• R-Value Free: 
  0.284 (Depositor), 0.283 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.213 (Depositor) 

Starting Model: in silico

Literature

Structure of the Tetramerization Domain of Measles Virus Phosphoprotein.

Communie, G., Crepin, T., Maurin, D., Ringkjobing Jensen, M., Blackledge, M., Ruigrok, R.W.

(2013) J Virol 87: 7166

• PubMed: 23576502 
• DOI: https://doi.org/10.1128/JVI.00487-13
• Primary Citation Related Structures: 
  3ZDO


• PubMed Abstract: 
  

  The atomic structure of the stable tetramerization domain of the measles virus phosphoprotein shows a tight four-stranded coiled coil. Although at first sight similar to the tetramerization domain of the Sendai virus phosphoprotein, which has a hydrophilic interface, the measles virus domain has kinked helices that have a strongly hydrophobic interface and it lacks the additional N-terminal three helical bundles linking the long helices.

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Organizational Affiliation: 
• UJF-EMBL-CNRS, UMI 3265, Unit for Virus Host Cell Interactions, Grenoble, France.

Biological Assembly 1  

Global Symmetry: Cyclic - C4  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C4  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 77.04 kDa 
• Atom Count: 4,143 
• Modeled Residue Count: 505 
• Deposited Residue Count: 672 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PHOSPHOPROTEIN	A, B, C, D, E, F, G, H	84	Measles morbillivirus	Mutation(s): 0
UniProt
Find proteins for Q83623 (Measles virus (strain Edmonston B)) Explore Q83623  Go to UniProtKB:  Q83623

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MRD	I [auth A]	(4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.07 Å
• R-Value Free:  0.284 (Depositor), 0.283 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.213 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 27.67	α = 91.42
b = 45.72	β = 93.58
c = 115.83	γ = 90.08

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-04-24 
Deposition Author(s): Communie, G., Crepin, T., Jensen, M.R., Blackledge, M., Ruigrok, R.W.H.

Revision History  

• Version 1.0: 2013-04-24
  Type: Initial release
  
• Version 1.1: 2013-06-12
  Changes: Database references
• Version 1.2: 2024-05-01
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description