Structure of archaerhodopsin-2 at 1.8 A resolution
Kouyama, T., Fujii, R., Kanada, S., Nakanishi, T., Chan, S.K., Murakami, M.(2014) Acta Crystallogr.,Sect.D 70: 2692-2701
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2014) Acta Crystallogr.,Sect.D 70: 2692-2701
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Archaerhodopsin-2 | A | 259 | Halobacterium sp. (strain aus-2) | Mutation(s): 0  |
Membrane proteinmpstruc | Group:  TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Sub Group:  Bacterial, Algal, and viral Rhodopsins | Protein:  Archaerhodopsin-2 (aR-2) | |
Find proteins for P29563 (Halobacterium sp. (strain aus-2)) Go to UniProtKB:  P29563 |
Ligands 7 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
L4P Query on L4P | A | 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL C46 H95 O8 P AFYVWQWWQKSZEV-WGOBCRBGSA-N | ![]() |  Ligand Interaction | |
SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | ![]() |  Ligand Interaction | |
RET Query on RET | A | RETINAL C20 H28 O NCYCYZXNIZJOKI-OVSJKPMPSA-N | ![]() |  Ligand Interaction | |
22B Query on 22B | A | BACTERIORUBERIN C50 H76 O4 UVCQMCCIAHQDAF-CUMPQFAQSA-N | ![]() |  Ligand Interaction | |
L2P Query on L2P | A | 2,3-DI-PHYTANYL-GLYCEROL 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL C43 H88 O3 ISDBCJSGCHUHFI-UMZPFTBHSA-N | ![]() |  Ligand Interaction | |
L3P Query on L3P | A | 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE C46 H94 O11 P2 TZXJQSKPTCRGCA-VZSPAKCESA-L | ![]() |  Ligand Interaction | |
SQL Query on SQL | A | (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene squalene C30 H50 YYGNTYWPHWGJRM-AAJYLUCBSA-N | ![]() |  Ligand Interaction |
Length (Å) | Angle (°) |
---|---|
a = 62.739 | α = 90.00 |
b = 62.739 | β = 90.00 |
c = 331.464 | γ = 120.00 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
ADSC | data collection |
CNS | refinement |
SCALA | data scaling |
CNS | phasing |