Macromolecule Content

Total Structure Weight: 78.73 kDa
Atom Count: 6,099
Modelled Residue Count: 655
Deposited Residue Count: 660
Unique protein chains: 1

3W0K

Crystal Structure of a glycoside hydrolase

PDB DOI: 10.2210/pdb3W0K/pdb

Classification: HYDROLASE
Organism(s): Caldanaerobius polysaccharolyticus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-10-31 Released: 2013-02-20
Deposition Author(s): Oyama, T., Nakamura, H., Morikawa, K., Cann, I.K.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.188
R-Value Work: 0.176
R-Value Observed: 0.176

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of a glycoside hydrolase

Oyama, T., Schmitz, G.E., Dodd, D., Han, Y., Burnett, A., Nagasawa, N., Mackie, R.I., Nakamura, H., Morikawa, K., Cann, I.K.O.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional endomannanase/endoglucanase	A, B	330	Caldanaerobius polysaccharolyticus	Mutation(s): 0 Gene Names: man5B
UniProt
Find proteins for D9J0D7 (Caldanaerobius polysaccharolyticus) Explore D9J0D7 Go to UniProtKB: D9J0D7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D9J0D7
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.188
R-Value Work: 0.176
R-Value Observed: 0.176
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.133	α = 90
b = 147.642	β = 104.51
c = 55.422	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-02-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-02-20
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.