3VQG

Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.172 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase

Akiyoshi, Y.Nakakura, Y.Hamada, D.Goda, N.Tenno, T.Narita, H.Nakagawa, A.Furuse, M.Suzuki, M.Hiroaki, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase LNXA94Mus musculusMutation(s): 0 
Gene Names: Lnx1Lnx
EC: 2.3.2.27
UniProt
Find proteins for O70263 (Mus musculus)
Explore O70263 
Go to UniProtKB:  O70263
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
C-terminal peptide from Immunoglobulin superfamily member 5B9Mus musculusMutation(s): 0 
Gene Names: Igsf5Jam4
UniProt
Find proteins for Q7TSN7 (Mus musculus)
Explore Q7TSN7 
Go to UniProtKB:  Q7TSN7
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.172 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.852α = 90
b = 50.768β = 120.08
c = 33.136γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-03-27
    Type: Initial release