3VM8

Crystal structure of the human APOBEC3C having HIV-1 Vif-binding interface


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.302 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of the human APOBEC3C having HIV-1 Vif-binding interface

Kitamura, S.Ode, H.Nakashima, M.Imahashi, M.Naganawa, Y.Ibe, S.Yokomaku, Y.Watanabe, N.Suzuki, A.Sugiura, W.Iwatani, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Probable DNA dC->dU-editing enzyme APOBEC-3CA, B190Homo sapiensMutation(s): 0 
Gene Names: APOBEC3CAPOBEC1LPBI
EC: 3.5.4 (PDB Primary Data), 3.5.4.38 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRW3 (Homo sapiens)
Explore Q9NRW3 
Go to UniProtKB:  Q9NRW3
PHAROS:  Q9NRW3
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.302 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.232 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.419α = 90
b = 104.419β = 90
c = 74.502γ = 120
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-10-03
    Type: Initial release