3V8D

Crystal structure of human CYP7A1 in complex with 7-ketocholesterol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of human CYP7A1 in complex with 7-ketocholesterol

Strushkevich, N.Tempel, W.MacKenzie, F.Wernimont, A.K.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Weigelt, J.Usanov, S.A.Park, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cholesterol 7-alpha-monooxygenaseA, B491Homo sapiensMutation(s): 1 
Gene Names: CYP7A1CYP7
EC: 1.14.13.17 (PDB Primary Data), 1.14.14.26 (UniProt), 1.14.14.23 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P22680 (Homo sapiens)
Explore P22680 
Go to UniProtKB:  P22680
PHAROS:  P22680
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22680
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download Ideal Coordinates CCD File 
C [auth A],
M [auth B]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
0GV
Query on 0GV

Download Ideal Coordinates CCD File 
D [auth A],
N [auth B]
(3beta,8alpha,9beta)-3-hydroxycholest-5-en-7-one
C27 H44 O2
YIKKMWSQVKJCOP-ABXCMAEBSA-N
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
E [auth A],
F [auth A],
G [auth A],
O [auth B],
P [auth B],
E [auth A],
F [auth A],
G [auth A],
O [auth B],
P [auth B],
Q [auth B]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
H [auth A],
I [auth A],
J [auth A],
K [auth A],
L [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth A],
L [auth A],
R [auth B],
S [auth B],
T [auth B],
U [auth B],
V [auth B],
W [auth B],
X [auth B],
Y [auth B],
Z [auth B]
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/m33v8d Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.618α = 66.33
b = 74.22β = 75.53
c = 87.933γ = 69.62
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-01-09
    Type: Initial release
  • Version 1.1: 2017-11-08
    Changes: Refinement description