Macromolecule Content

Total Structure Weight: 30.71 kDa
Atom Count: 2,282
Modelled Residue Count: 262
Deposited Residue Count: 279
Unique protein chains: 1

3UZU

The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei

PDB DOI: 10.2210/pdb3UZU/pdb

Classification: TRANSFERASE
Organism(s): Burkholderia pseudomallei
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-12-07 Released: 2011-12-14
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.217
R-Value Work: 0.180
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei

Clifton, M.C., Abendroth, J., Sankaran, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal RNA small subunit methyltransferase A	A	279	Burkholderia pseudomallei	Mutation(s): 0 Gene Names: rsmA, ksgA, BURPS1710b_0874 EC: 2.1.1.182
UniProt
Find proteins for Q63X76 (Burkholderia pseudomallei (strain K96243)) Explore Q63X76 Go to UniProtKB: Q63X76
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q63X76
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.217
R-Value Work: 0.180
R-Value Observed: 0.182
Space Group: C 1 2 1
Diffraction Data DOI: 10.18430/M33UZU

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.19	α = 90
b = 49.34	β = 95.91
c = 61.16	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-12-14

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2011-12-14
Type: Initial release
Version 1.1: 2017-10-11
Changes: Data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.