Crystal structure of a dihydrolipoamide dehydrogenase from Sinorhizobium meliloti 1021
Kumaran, D., Almo, S.C., Swaminathan, S.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Dihydrolipoyl dehydrogenase | A, B | 491 | Rhizobium meliloti (strain 1021) | Mutation(s): 0  Gene Names: lpdA2 EC: 1.8.1.4 |
Find proteins for Q92LK0 (Rhizobium meliloti (strain 1021)) Go to UniProtKB:  Q92LK0 |
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | ![]() |  Ligand Interaction | |
FAD Query on FAD | A, B | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N | ![]() |  Ligand Interaction | |
EDO Query on EDO | B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
Length (Å) | Angle (°) |
---|---|
a = 74.433 | α = 90.00 |
b = 104.716 | β = 90.00 |
c = 120.622 | γ = 90.00 |
Software Name | Purpose |
---|---|
ARP/wARP | model building |
SHELXD | phasing |
HKL-2000 | data scaling |
SHELXE | model building |
REFMAC | refinement |
CBASS | data collection |
HKL-2000 | data reduction |