3UOF

Mycobacterium tuberculosis bacterioferritin, BfrA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.213 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Mycobacterium tuberculosis bacterioferritin, BfrA

McMath, L.M.Goulding, C.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
BacterioferritinA, B, C, D, E, F161Mycobacterium tuberculosisMutation(s): 0 
Gene Names: bfrbfrAMT1925MTCY180.42cRv1876
EC: 1.16.3.1
UniProt
Find proteins for P9WPQ9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WPQ9 
Go to UniProtKB:  P9WPQ9
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM (Subject of Investigation/LOI)
Query on HEM

Download Ideal Coordinates CCD File 
J [auth B], P [auth D], S [auth E]PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
TRS
Query on TRS

Download Ideal Coordinates CCD File 
I [auth A], M [auth B], X [auth F]2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
FE
Query on FE

Download Ideal Coordinates CCD File 
G [auth A] , H [auth A] , K [auth B] , L [auth B] , N [auth C] , O [auth C] , Q [auth D] , R [auth D] , 
G [auth A],  H [auth A],  K [auth B],  L [auth B],  N [auth C],  O [auth C],  Q [auth D],  R [auth D],  T [auth E],  U [auth E],  V [auth F],  W [auth F]
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.213 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 122.797α = 90
b = 122.797β = 90
c = 174.691γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-11-21
    Type: Initial release