3UK3 | pdb_00003uk3

Crystal structure of ZNF217 bound to DNA

PDB DOI: https://doi.org/10.2210/pdb3UK3/pdb
NAKB: 3UK3

Classification: DNA/METAL BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-11-08 Released: 2012-12-05
Deposition Author(s): Vandevenne, M.S., Jacques, D.A., Guss, J.M., Mackay, J.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.256 (Depositor), 0.270 (DCC)
R-Value Work:
0.224 (Depositor), 0.240 (DCC)
R-Value Observed:
0.225 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Rediscovering DNA recognition by classical Zinc Fingers.

Vandevenne, M.S., Jacques, D.A., Guss, J.M., Mackay, J.P.

To be published.

Macromolecule Content

Total Structure Weight: 26.52 kDa
Atom Count: 1,796
Modeled Residue Count: 146
Deposited Residue Count: 154
Unique protein chains: 1
Unique nucleic acid chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger protein 217	C, D	57	Homo sapiens	Mutation(s): 0 Gene Names: ZNF217, ZABC1
UniProt & NIH Common Fund Data Resources
Find proteins for O75362 (Homo sapiens) Explore O75362 Go to UniProtKB: O75362
PHAROS: O75362 GTEx: ENSG00000171940
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O75362
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
5'-D(TPTPTPGPCPAPGPAPAPTPCPGPAPTPTPCPTPGPCPA)-3'	A	20	N/A
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Length	Organism	Image
5'-D(APAPTPGPCPAPGPAPAPTPCPGPAPTPTPCPTPGPCPA)-3'	B	20	N/A
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain G [auth C] SDF format, chain H [auth C] SDF format, chain K [auth D] SDF format, chain L [auth D] SDF format, chain M [auth D] SDF format, chain I [auth C] SDF format, chain F [auth B] MOL2 format, chain E [auth B] MOL2 format, chain G [auth C] MOL2 format, chain H [auth C] MOL2 format, chain K [auth D] MOL2 format, chain L [auth D] MOL2 format, chain M [auth D] MOL2 format, chain I [auth C] MOL2 format, chain F [auth B] mmCIF format, chain E [auth B] mmCIF format, chain G [auth C] mmCIF format, chain H [auth C] mmCIF format, chain K [auth D] mmCIF format, chain L [auth D] mmCIF format, chain M [auth D] mmCIF format, chain I [auth C] mmCIF format, chain F [auth B]	E [auth B] F [auth B] G [auth C] H [auth C] I [auth C] E [auth B], F [auth B], G [auth C], H [auth C], I [auth C], K [auth D], L [auth D], M [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth C] Focus chain I [auth C] Focus chain K [auth D] Focus chain L [auth D] Focus chain M [auth D] Interactions & Density Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth C] Focus chain I [auth C] Focus chain K [auth D] Focus chain L [auth D] Focus chain M [auth D]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain J [auth C] MOL2 format, chain J [auth C] mmCIF format, chain J [auth C]	J [auth C]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain J [auth C] Interactions & Density Focus chain J [auth C]