Crystal structure of a probable glycerol dehydrogenase from Sinorhizobium meliloti 1021
Agarwal, R., Almo, S.C., Swaminathan, S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Probable glycerol dehydrogenase | 387 | Sinorhizobium meliloti | Mutation(s): 0  Gene Names: gldA, R02550, SMc02038 EC: 1.1.1.6 | ![]() | |
UniProt | |||||
Find proteins for Q92MR2 (Rhizobium meliloti (strain 1021)) Explore Q92MR2  Go to UniProtKB:  Q92MR2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q92MR2 | ||||
Protein Feature ViewExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | I [auth A], K [auth B], M [auth C], O [auth D], Q [auth E], | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
SE Query on SE | R [auth E], W [auth H] | SELENIUM ATOM Se SPVXKVOXSXTJOY-UHFFFAOYSA-N | Ligand Interaction | ||
ZN Query on ZN | J [auth A], L [auth B], N [auth C], P [auth D], S [auth E], | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 79.483 | α = 76.94 |
b = 98.996 | β = 83.38 |
c = 104.734 | γ = 71.47 |
Software Name | Purpose |
---|---|
CBASS | data collection |
MOLREP | phasing |
CCP4 | model building |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
CCP4 | phasing |