3UGS

Crystal structure of a probable undecaprenyl diphosphate synthase (uppS) from Campylobacter jejuni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.207 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of a probable undecaprenyl diphosphate synthase (uppS) from Campylobacter jejuni

Nocek, B.Gu, M.Grimshaw, S.Anderson, W.F.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Undecaprenyl pyrophosphate synthaseB [auth A],
A [auth B]
225Campylobacter jejuniMutation(s): 0 
Gene Names: uppSCj0824
EC: 2.5.1.31 (PDB Primary Data), 2.5.1 (UniProt)
UniProt
Find proteins for Q9PP99 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168))
Explore Q9PP99 
Go to UniProtKB:  Q9PP99
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9PP99
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FFT
Query on FFT

Download Ideal Coordinates CCD File 
C [auth B],
D [auth A]
(2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl dihydrogen phosphate
C15 H27 O4 P
ALEWCKXBHSDCCT-FBXUGWQNSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.643α = 90
b = 67.234β = 90
c = 118.85γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
MOLREPphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

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Ligand Structure Quality Assessment 



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-11-30
    Type: Initial release