Macromolecule Content

Total Structure Weight: 66.47 kDa
Atom Count: 4,268
Modelled Residue Count: 520
Deposited Residue Count: 572
Unique protein chains: 1

3TZ9

Kinase domain of cSrc in complex with RL130

PDB DOI: 10.2210/pdb3TZ9/pdb

Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Organism(s): Gallus gallus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2011-09-27 Released: 2012-10-10
Deposition Author(s): Gruetter, C., Richters, A., Rauh, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.283
R-Value Work: 0.211
R-Value Observed: 0.216

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Overcoming Gatekeeper Mutations in cSrc and Abl by Hybrid Compound Design

Richters, A., Getlik, M., Gruetter, C., Schneider, R., Heuckmann, J.M., Heynck, S., Sos, M.L., Thomas, R.K., Rauh, D.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Proto-oncogene tyrosine-protein kinase Src	A, B	286	Gallus gallus	Mutation(s): 1 Gene Names: SRC, v-Src sarcoma viral oncogene EC: 2.7.10.2
UniProt
Find proteins for P00523 (Gallus gallus) Explore P00523 Go to UniProtKB: P00523
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00523
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AQU Query on AQU Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	1-[1-(3-aminophenyl)-3-tert-butyl-1H-pyrazol-5-yl]-3-[4-(quinazolin-4-ylamino)phenyl]urea C₂₈ H₂₈ N₈ O SHTNULLAAVPXRC-UHFFFAOYSA-N		Ligand Interaction

Binding Affinity Annotations
ID	Source	Binding Affinity
AQU	BindingDB: 3TZ9	IC50: 38 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.283
R-Value Work: 0.211
R-Value Observed: 0.216
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.02	α = 79.6
b = 63.42	β = 87.89
c = 74.2	γ = 89.98

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SLS-Software	data collection
XDS	data reduction

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2012-10-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-10-10
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.