3TVL

Complex between the human thiamine triphosphatase and triphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural determinants of specificity and catalytic mechanism in mammalian 25-kDa thiamine triphosphatase.

Delvaux, D.Kerff, F.Murty, M.R.Lakaye, B.Czerniecki, J.Kohn, G.Wins, P.Herman, R.Gabelica, V.Heuze, F.Tordoir, X.Maree, R.Matagne, A.Charlier, P.De Pauw, E.Bettendorff, L.

(2013) Biochim Biophys Acta 1830: 4513-4523

  • DOI: 10.1016/j.bbagen.2013.05.014
  • Primary Citation of Related Structures:  
    3TVL

  • PubMed Abstract: 
  • Thiamine triphosphate (ThTP) is present in most organisms and might be involved in intracellular signaling. In mammalian cells, the cytosolic ThTP level is controlled by a specific thiamine triphosphatase (ThTPase), belonging to the CYTH superfamily of proteins ...

    Thiamine triphosphate (ThTP) is present in most organisms and might be involved in intracellular signaling. In mammalian cells, the cytosolic ThTP level is controlled by a specific thiamine triphosphatase (ThTPase), belonging to the CYTH superfamily of proteins. CYTH proteins are present in all superkingdoms of life and act on various triphosphorylated substrates.


    Organizational Affiliation

    GIGA-Neurosciences, Université de Liège, Avenue de l'Hôpital 1, Liège, Belgium.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Thiamine-triphosphataseA, B230Homo sapiensMutation(s): 0 
Gene Names: THTPA
EC: 3.6.1.28
Find proteins for Q9BU02 (Homo sapiens)
Explore Q9BU02 
Go to UniProtKB:  Q9BU02
NIH Common Fund Data Resources
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3PO
Query on 3PO

Download Ideal Coordinates CCD File 
C [auth A], E [auth B]TRIPHOSPHATE
H5 O10 P3
UNXRWKVEANCORM-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
D [auth A], F [auth B], G [auth B]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
3POKd :  100000   nM  PDBBind
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.184 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.378α = 90
b = 63.529β = 108.75
c = 70.95γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
AMoREphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-10-10
    Type: Initial release
  • Version 1.1: 2013-06-12
    Changes: Database references
  • Version 1.2: 2013-07-17
    Changes: Database references