3TG7 | pdb_00003tg7

Crystal structure of Adenovirus serotype 5 hexon at 1.6A resolution

• PDB DOI: https://doi.org/10.2210/pdb3TG7/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Human adenovirus 5
• Mutation(s): No 


• Deposited: 2011-08-17 Released: 2011-11-02 
• Deposition Author(s): Zhu, Y., Roszak, A.W., Isaacs, N.W., McVey, J.H., Nicklin, S.A., Baker, A.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.57 Å
• R-Value Free: 
  0.223 (Depositor), 0.223 (DCC) 
• R-Value Work: 
  0.184 (Depositor), 0.185 (DCC) 
• R-Value Observed: 
  0.186 (Depositor) 

Starting Model: experimental

Literature

crystal structure of Adenovirus serotype 5 hexon at 1.6A resolution

Zhu, Y., Roszak, A.W., Isaacs, N.W., McVey, J.H., Nicklin, S.A., Baker, A.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 107.98 kDa 
• Atom Count: 8,005 
• Modeled Residue Count: 889 
• Deposited Residue Count: 951 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hexon protein	A	951	Human adenovirus 5	Mutation(s): 0
UniProt
Find proteins for P04133 (Human adenovirus C serotype 5) Explore P04133  Go to UniProtKB:  P04133

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.57 Å
• R-Value Free:  0.223 (Depositor), 0.223 (DCC) 
• R-Value Work:  0.184 (Depositor), 0.185 (DCC) 
• R-Value Observed: 0.186 (Depositor) 

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.15	α = 90
b = 149.15	β = 90
c = 126.69	γ = 120

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-11-02 
Deposition Author(s): Zhu, Y., Roszak, A.W., Isaacs, N.W., McVey, J.H., Nicklin, S.A., Baker, A.H.

Revision History  

• Version 1.0: 2011-11-02
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-11-27
  Changes: Structure summary