Macromolecule Content

Total Structure Weight: 50.99 kDa
Atom Count: 3780
Residue Count: 402
Unique protein chains: 1

3SXY

Metal-free full-length structure of Tm0439, a metal-binding FCD family transcriptional regulator

DOI: 10.2210/pdb3SXY/pdb

Classification: TRANSCRIPTION REGULATOR
Organism(s): Thermotoga maritima
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2011-07-15 Released: 2011-11-16
Deposition Author(s): Czelakowski, G.P., Derewenda, Z.S., Integrated Center for Structure and Function Innovation (ISFI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.180
R-Value Work: 0.177
R-Value Observed: 0.177

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Metal-free full-length structure of Tm0439, a metal-binding FCD family transcriptional regulator

Czelakowski, G.P., Derewenda, Z.S.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator, GntR family	A, B	218	Thermotoga maritima	Mutation(s): 0 Gene Names: TM_0439
Find proteins for Q9WYS0 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Explore Q9WYS0 Go to UniProtKB: Q9WYS0
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.180
R-Value Work: 0.177
R-Value Observed: 0.177
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.512	α = 90
b = 69.822	β = 95.44
c = 63.98	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
SERGUI	data collection
DENZO	data reduction
SCALEPACK	data scaling
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2011-07-15
Released Date: 2011-11-16

Deposition Author(s):

Czelakowski, G.P.

Derewenda, Z.S.

Integrated Center for Structure and Function Innovation (ISFI)

Revision History

Version 1.0: 2011-11-16
Type: Initial release
Version 1.1: 2017-11-08
Changes: Advisory, Refinement description

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.