3SPS | pdb_00003sps

Crystal Structure of Apo-Hexameric Acyl-CoA Thioesterase

PDB DOI: https://doi.org/10.2210/pdb3SPS/pdb

Classification: HYDROLASE
Organism(s): Halalkalibacterium halodurans C-125
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-07-03 Released: 2011-08-17
Deposition Author(s): Forwood, J.K., Marfori, M., Kobe, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.287 (Depositor), 0.308 (DCC)
R-Value Work:
0.231 (Depositor)
R-Value Observed:
0.234 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3SPS

This is version 1.1 of the entry. See complete history.

Literature

Ligand-Induced Conformational Changes within a Hexameric Acyl-CoA Thioesterase

Forwood, J.K., Marfori, M., Kobe, B.

To be published.

Macromolecule Content

Total Structure Weight: 112.88 kDa
Atom Count: 7,221
Modeled Residue Count: 933
Deposited Residue Count: 1,014
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA hydrolase	A, B, C, D, E A, B, C, D, E, F	169	Halalkalibacterium halodurans C-125	Mutation(s): 0 Gene Names: BH0798 EC: 3.1.2
UniProt
Find proteins for Q9KEQ1 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KEQ1 Go to UniProtKB: Q9KEQ1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KEQ1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.287 (Depositor), 0.308 (DCC)
R-Value Work: 0.231 (Depositor)
R-Value Observed: 0.234 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.179	α = 90
b = 78.544	β = 90
c = 187.378	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
PHASES	phasing
REFMAC	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-08-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-08-17
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.