Download MendeleyCrystal structure of the mutant P311A of enolase superfamily member from Vibrionales bacterium complexed with Mg and D-Arabinonate
Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.To be published.
3SBF
Crystal structure of the mutant P311A of enolase superfamily member from VIBRIONALES BACTERIUM complexed with Mg and D-Arabinonate
- PDB DOI: https://doi.org/10.2210/pdb3SBF/pdb
- Classification: ISOMERASE
- Organism(s): Vibrionales bacterium SWAT-3
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2011-06-04 Released: 2012-06-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.206
- R-Value Work: 0.180
- R-Value Observed: 0.181
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| mandelate racemase / muconate lactonizing enzyme | 401 | Vibrionales bacterium SWAT-3 | Mutation(s): 1 Gene Names: VSWAT3_13707 |  | |
UniProt | |||||
Find proteins for A5KUH4 (Vibrionales bacterium (strain SWAT-3)) Explore A5KUH4 Go to UniProtKB: A5KUH4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5KUH4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | F [auth A], L [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| D8T Query on D8T | G [auth A], J [auth B], M [auth C], O [auth D] | D-arabinonic acid C5 H10 O6 QXKAIJAYHKCRRA-JJYYJPOSSA-N |  | ||
| MG Query on MG | E [auth A], H [auth B], I [auth B], K [auth C], N [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.206
- R-Value Work: 0.180
- R-Value Observed: 0.181
- Space Group: P 42 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 163.372 | α = 90 |
| b = 163.372 | β = 90 |
| c = 110.412 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| BALBES | phasing |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2012-06-06 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.
Revision History (Full details and data files)
- Version 1.0: 2012-06-06
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
