Macromolecule Content

Total Structure Weight: 75.65 kDa
Atom Count: 5199
Modelled Residue Count: 662
Deposited Residue Count: 686
Unique protein chains: 1

3RYS

The crystal structure of adenine deaminase (AAur1117) from Arthrobacter aurescens

PDB DOI: 10.2210/pdb3RYS/pdb

Classification: HYDROLASE
Organism(s): Paenarthrobacter aurescens TC1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2011-05-11 Released: 2011-05-25
Deposition Author(s): Zhang, Z., Goble, A.M., Raushel, F.M., Swaminathan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.256
R-Value Work: 0.200
R-Value Observed: 0.203

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of adenine deaminase (AAur1117) from Arthrobacter aurescens

Zhang, Z., Goble, A.M., Raushel, F.M., Swaminathan, S.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenosine deaminase 1	A, B	343	Paenarthrobacter aurescens TC1	Mutation(s): 0 Gene Names: add, add1, AAur_1117 EC: 3.5.4.4 (PDB Primary Data), 3.5.4.2 (UniProt)
UniProt
Find proteins for A1R3U3 (Paenarthrobacter aurescens (strain TC1)) Explore A1R3U3 Go to UniProtKB: A1R3U3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A1R3U3
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADE Query on ADE Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B]	D [auth A], F [auth B]	ADENINE C₅ H₅ N₅ GFFGJBXGBJISGV-UHFFFAOYSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B]	C [auth A], E [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.256
R-Value Work: 0.200
R-Value Observed: 0.203
Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.104	α = 90
b = 124.104	β = 90
c = 89.724	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2011-05-11
Released Date: 2011-05-25

Deposition Author(s):

Swaminathan, S.

Revision History (Full details and data files)

Version 1.0: 2011-05-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.