3RLS | pdb_00003rls

Crystal structure of yeast AF-9 homolog protein Yaf9

PDB DOI: https://doi.org/10.2210/pdb3RLS/pdb

Classification: TRANSCRIPTION
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-04-20 Released: 2011-05-25
Deposition Author(s): Chen, S.D., Wu, L.J., Liu, Y.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.202 (Depositor), 0.207 (DCC)
R-Value Work:
0.158 (Depositor), 0.164 (DCC)
R-Value Observed:
0.160 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of yeast AF-9 homolog protein yaf9

Liu, Y.F.

To be published.

Macromolecule Content

Total Structure Weight: 40.45 kDa
Atom Count: 2,860
Modeled Residue Count: 296
Deposited Residue Count: 350
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein AF-9 homolog	A, B	175	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: YAF9
UniProt
Find proteins for P53930 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53930 Go to UniProtKB: P53930
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53930
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.202 (Depositor), 0.207 (DCC)
R-Value Work: 0.158 (Depositor), 0.164 (DCC)
R-Value Observed: 0.160 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.643	α = 71.78
b = 44.267	β = 89.86
c = 62.158	γ = 83.31

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-05-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.