3RHF

Crystal structure of Polyphosphate Kinase 2 from Arthrobacter aurescens TC1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of Polyphosphate Kinase 2 from Arthrobacter aurescens TC1

Nocek, B.Hatzos-Skintges, C.Feldmann, B.Babnigg, G.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative polyphosphate kinase 2 family proteinA, B, C, D289Paenarthrobacter aurescens TC1Mutation(s): 0 
Gene Names: AAur_2811
UniProt
Find proteins for A1R8G0 (Paenarthrobacter aurescens (strain TC1))
Explore A1R8G0 
Go to UniProtKB:  A1R8G0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA1R8G0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PG4
Query on PG4

Download Ideal Coordinates CCD File 
J [auth B],
L [auth B],
P [auth C],
V [auth D]
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
FLC
Query on FLC

Download Ideal Coordinates CCD File 
G [auth A],
K [auth B],
R [auth C],
X [auth D]
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
PGE
Query on PGE

Download Ideal Coordinates CCD File 
E [auth A],
F [auth A],
W [auth D],
Z [auth D]
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
PO4
Query on PO4

Download Ideal Coordinates CCD File 
AA [auth D],
H [auth A],
I [auth A],
M [auth B],
N [auth B],
AA [auth D],
H [auth A],
I [auth A],
M [auth B],
N [auth B],
S [auth C],
T [auth C],
U [auth C]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
Q [auth C],
Y [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
O [auth B]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.187 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 126.353α = 90
b = 126.353β = 90
c = 199.064γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
HKL-3000phasing
PHENIXmodel building
SHELXmodel building
ARP/wARPmodel building
MLPHAREphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing
SHELXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-06-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance