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Download EndnoteCrystal structure of a Hypothetical TetR-like transcriptional regulator (Sama_0099) from SHEWANELLA AMAZONENSIS SB2B at 2.42 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3RH2
Crystal structure of a TetR-like transcriptional regulator (Sama_0099) from Shewanella amazonensis SB2B at 2.42 A resolution
- DOI: 10.2210/pdb3RH2/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
- Expression System: Escherichia coli
- Deposited: 2011-04-11 Released: 2011-05-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.42 Å
- R-Value Free: 0.250
- R-Value Work: 0.205
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Hypothetical TetR-like transcriptional regulator | A | 212 | Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | Mutation(s): 0 |
Find proteins for A1S1Q5 (Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)) Go to UniProtKB: A1S1Q5 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | A | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.42 Å
- R-Value Free: 0.250
- R-Value Work: 0.205
- Space Group: P 43 21 2
- Diffraction Data DOI:
10.18430/M33RH2 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 123.536 | α = 90.00 |
| b = 123.536 | β = 90.00 |
| c = 49.552 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| SHELXD | phasing |
| XSCALE | data scaling |
| SHARP | phasing |
| MolProbity | model building |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2011-04-11
- Released Date: 2011-05-04
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
