3RGT

Crystal structure of d-mannonate dehydratase from Chromohalobacter salexigens complexed with D-Arabinohydroxamate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of d-mannonate dehydratase from Chromohalobacter salexigens complexed with d-arabinohydroxamate

Fedorov, A.A.Fedorov, E.V.Wichelecki, D.Gerlt, J.A.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-mannonate dehydratase
A, B, C, D
405Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)Mutation(s): 0 
Gene Names: manD
EC: 4.2.1.-
Find proteins for Q1QT89 (Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768))
Go to UniProtKB:  Q1QT89
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EZ4
Query on EZ4

Download SDF File 
Download CCD File 
A, B, C, D
(2S,3R,4R)-2,3,4,5-tetrahydroxy-N-oxo-pentanamide
C5 H9 N O6
VIMQVNVKLDVNFU-JJYYJPOSSA-N
 Ligand Interaction
CO
Query on CO

Download SDF File 
Download CCD File 
A, B, C, D
COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.178 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 110.712α = 90.00
b = 179.657β = 90.00
c = 85.422γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
PHENIXrefinement
SCALEPACKdata scaling
ADSCdata collection
BALBESphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-04-11
    Type: Initial release