Download MendeleyCrystal Structure of a native FAD-dependent Hydroxynitrile Lyase derived from the Japanese apricot, Prunus mume
Cielo, C.B.C., Yamane, T., Asano, Y., Watanabe, N., Suzuki, A., Fukuta, Y.To be published.
3RED
3.0 A structure of the Prunus mume hydroxynitrile lyase isozyme-1
- PDB DOI: 10.2210/pdb3RED/pdb
- Classification: LYASE
- Organism(s): Prunus mume
- Mutation(s): No
- Deposited: 2011-04-04 Released: 2012-06-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.03 Å
- R-Value Free: 0.253
- R-Value Work: 0.191
- R-Value Observed: 0.194
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hydroxynitrile lyase | 521 | Prunus mume | Mutation(s): 0 Gene Names: PmHNL EC: 4.1.2.10 |  | |
UniProt | |||||
Find proteins for B9X0I1 (Prunus mume) Explore B9X0I1 Go to UniProtKB: B9X0I1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B9X0I1 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.03 Å
- R-Value Free: 0.253
- R-Value Work: 0.191
- R-Value Observed: 0.194
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 112.019 | α = 89.92 |
| b = 113.302 | β = 79.13 |
| c = 169.488 | γ = 80.83 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-06-20 Deposition Author(s): Cielo, C.B.C., Yamane, T., Asano, Y., Watanabe, N., Suzuki, A., Fukuta, Y.
Revision History (Full details and data files)
- Version 1.0: 2012-06-20
Type: Initial release
