3RAY

Crystal structure of Methyltransferase domain of human PR domain-containing protein 11


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of Methyltransferase domain of human PR domain-containing protein 11

Dong, A.Zeng, H.Loppnau, P.Walker, J.R.Bountra, C.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Min, J.Wu, H.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PR domain-containing protein 11
A
237Homo sapiensMutation(s): 0 
Gene Names: PRDM11 (PFM8)
EC: 2.1.1.-
Find proteins for Q9NQV5 (Homo sapiens)
Go to Gene View: PRDM11
Go to UniProtKB:  Q9NQV5
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
UNX
Query on UNX

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A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.194 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 31.154α = 90.00
b = 55.156β = 90.00
c = 106.283γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
HKL-2000data scaling
BUSTERrefinement
SBC-Collectdata collection
PHASESphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-04-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description