3QUS | pdb_00003qus

Crystal Structure of N10-Formyltetrahydrofolate Synthetase with ATPgS

PDB DOI: https://doi.org/10.2210/pdb3QUS/pdb

Classification: LIGASE
Organism(s): Neomoorella thermoacetica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-02-24 Released: 2011-12-14
Deposition Author(s): Celeste, L.R., Chai, G., Bielak, M., Lovelace, L.L., Lebioda, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.84 Å
R-Value Free:
0.289 (Depositor), 0.286 (DCC)
R-Value Work:
0.217 (Depositor), 0.216 (DCC)
R-Value Observed:
0.221 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.4 of the entry. See complete history.

Literature

Crystal Strucutre of N10-Formyltetrahydrofolate Synthetase with ATPgS

Celeste, L.R., Chai, G., Bielak, M., Minor, W., Lovelace, L.L., Lebioda, L.

To be published.

Macromolecule Content

Total Structure Weight: 121.86 kDa
Atom Count: 8,438
Modeled Residue Count: 1,099
Deposited Residue Count: 1,114
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Formate--tetrahydrofolate ligase	A, B	557	Neomoorella thermoacetica	Mutation(s): 0 Gene Names: fhs, Moorella EC: 6.3.4.3
UniProt
Find proteins for P21164 (Neomoorella thermoacetica) Explore P21164 Go to UniProtKB: P21164
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P21164
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS Query on AGS Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain L [auth B] MOL2 format, chain G [auth A] MOL2 format, chain L [auth B] mmCIF format, chain G [auth A] mmCIF format, chain L [auth B]	G [auth A], L [auth B]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain G [auth A] Focus chain L [auth B] Interactions & Density Focus chain G [auth A] Focus chain L [auth B]
TOE Query on TOE Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain H [auth A]	H [auth A], I [auth A]	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL C₇ H₁₆ O₄ JLGLQAWTXXGVEM-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Interactions & Density Focus chain H [auth A] Focus chain I [auth A]
MAE Query on MAE Download:Ideal Coordinates CCD File SDF format, chain N [auth B] SDF format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain M [auth B] mmCIF format, chain N [auth B] mmCIF format, chain M [auth B]	M [auth B], N [auth B]	MALEIC ACID C₄ H₄ O₄ VZCYOOQTPOCHFL-UPHRSURJSA-N		Interactions Focus chain M [auth B] Focus chain N [auth B] Interactions & Density Focus chain M [auth B] Focus chain N [auth B]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth B] SDF format, chain J [auth B] SDF format, chain E [auth A] SDF format, chain D [auth A] SDF format, chain C [auth A] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B] MOL2 format, chain J [auth B] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] mmCIF format, chain F [auth A] mmCIF format, chain K [auth B] mmCIF format, chain J [auth B] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A]	C [auth A] D [auth A] E [auth A] F [auth A] J [auth B] C [auth A], D [auth A], E [auth A], F [auth A], J [auth B], K [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain J [auth B] Focus chain K [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain J [auth B] Focus chain K [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.84 Å
R-Value Free: 0.289 (Depositor), 0.286 (DCC)
R-Value Work: 0.217 (Depositor), 0.216 (DCC)
R-Value Observed: 0.221 (Depositor)

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 160.84	α = 90
b = 160.84	β = 90
c = 256.479	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2011-12-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-12-14
Type: Initial release
Version 1.1: 2011-12-21
Changes: Database references
Version 1.2: 2012-02-15
Changes: Non-polymer description
Version 1.3: 2020-09-09
Changes: Database references, Derived calculations, Structure summary
Version 1.4: 2023-09-13
Changes: Data collection, Database references, Refinement description

3QUS | pdb_00003qus

Crystal Structure of N10-Formyltetrahydrofolate Synthetase with ATPgS

Literature

Crystal Strucutre of N10-Formyltetrahydrofolate Synthetase with ATPgS

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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