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Download EndnoteCrystal structure of putative modulator of gyrase (PmbA) from Pseudomonas aeruginosa PAO1
Tkaczuk, K.L., Chruszcz, M., Evdokimova, E., Liu, F., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.To be published.
3QTD
Crystal structure of putative modulator of gyrase (PmbA) from Pseudomonas aeruginosa PAO1
- DOI: 10.2210/pdb3QTD/pdb
- Classification: GENE REGULATION
- Organism(s): Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2011-02-22 Released: 2011-03-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.7 Å
- R-Value Free: 0.279
- R-Value Work: 0.225
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| PmbA protein | A, B, C, D | 449 | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | Mutation(s): 0 Gene Names: pmbA |
Find proteins for Q9HVU9 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Go to UniProtKB: Q9HVU9 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | A, B, C, D | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.7 Å
- R-Value Free: 0.279
- R-Value Work: 0.225
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 69.385 | α = 90.00 |
| b = 116.201 | β = 90.00 |
| c = 253.968 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| DM | model building |
| Coot | model building |
| CCP4 | model building |
| RESOLVE | model building |
| SHELXE | model building |
| DM | phasing |
| CCP4 | phasing |
| HKL-3000 | data collection |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2011-02-22
- Released Date: 2011-03-30
- Deposition Author(s): Tkaczuk, K.L., Chruszcz, M., Evdokimova, E., Liu, F., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
