Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 32.84 kDa 
• Atom Count: 2061 
• Modelled Residue Count: 250 
• Deposited Residue Count: 281 
• Unique protein chains: 1

3QBN

Structure of Human Aurora A in Complex with a diaminopyrimidine

• PDB DOI: 10.2210/pdb3QBN/pdb

• Classification: TRANSFERASE/TRANSFERASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2011-01-13 Released: 2012-01-18 
• Deposition Author(s): Gruetter, C., Simard, J.R., Rauh, D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.50 Å
• R-Value Free: 0.334 
• R-Value Work: 0.244 
• R-Value Observed: 0.257 

Literature

Identification of Ustilago maydis Aurora kinase as a novel antifungal target.

Tueckmantel, S., Greul, J.N., Janning, P., Brockmeyer, A., Gruetter, C., Simard, J.R., Gutbrod, O., Beck, M.E., Tietjen, K., Rauh, D., Schreier, P.H.

(2011) ACS Chem Biol 6: 926-933

• PubMed: 21671622 
• DOI: 10.1021/cb200112y
• Primary Citation of Related Structures:  
  3QBN


• PubMed Abstract: 
  

Infestation of crops by pathogenic fungi has continued to have a major impact by reducing yield and quality, emphasizing the need to identify new targets and develop new agents to improve methods of crop protection. Here we present Aurora kinase from the phytopathogenic fungus Ustilago maydis as a novel target for N-substituted diaminopyrimidines, a class of small-molecule kinase inhibitors. We show that Aurora kinase is essential in U. maydis and that diaminopyrimidines inhibit its activity in vitro. Furthermore, we observed an overall good correlation between in vitro inhibition of Aurora kinase and growth inhibition of diverse fungi in vivo. In vitro inhibition assays with Ustilago and human Aurora kinases indicate that some compounds of the N-substituted diaminopyrimidine class show specificity for the Ustilago enzyme, thus revealing their potential as selective fungicides.

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Organizational Affiliation: 

Chemical Genomics Centre of the Max Planck Society, Dortmund, Germany.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase 6	A	281	Homo sapiens	Mutation(s): 3  Gene Names: AURKA, AIK, ARK1, AURA, BTAK, STK15, STK6, AIRK1, AYK1, IAK1 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for O14965 (Homo sapiens) Explore O14965  Go to UniProtKB:  O14965
PHAROS:  O14965 GTEx:  ENSG00000087586

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
E9Z	B [auth A]	5-chloro-N~4~-cyclopropyl-N~2~-[4-(2-methoxyethoxy)phenyl]pyrimidine-2,4-diamine C16 H19 Cl N4 O2 JFFMERHILPGKFE-UHFFFAOYSA-N

Binding Affinity Annotations
ID	Source	Binding Affinity
E9Z	PDBBind:  3QBN	IC50: 5.9 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.50 Å
• R-Value Free: 0.334 
• R-Value Work: 0.244 
• R-Value Observed: 0.257 
• Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.2	α = 90
b = 84.2	β = 90
c = 169.33	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data scaling
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2011-01-13 
• Released Date: 2012-01-18 
Deposition Author(s): Gruetter, C., Simard, J.R., Rauh, D.

Revision History  

• Version 1.0: 2012-01-18
  Type: Initial release