3Q98

Structure of ygeW encoded protein from E. coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.001 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.

Li, Y.Jin, Z.Yu, X.Allewell, N.M.Tuchman, M.Shi, D.

(2011) Proteins 79: 2327-2334


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
transcarbamylase
A
399Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: ygeW
EC: 2.1.3.-
Find proteins for Q46803 (Escherichia coli (strain K12))
Go to UniProtKB:  Q46803
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.001 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.175 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 78.250α = 90.00
b = 78.250β = 90.00
c = 100.200γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
SHELXDphasing
XSCALEdata scaling
PHENIXrefinement
SHELXmodel building
SHELXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2011-09-14
    Type: Database references
  • Version 1.3: 2018-06-06
    Type: Data collection, Refinement description