3Q0V

ETHR From mycobacterium tuberculosis in complex with compound bdm31369


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 

wwPDB Validation 3D Report Full Report



Literature

Design, synthesis and optimization of new EthR inhibitors. A new alternative approach to fight tuberculosis by boosting ethionamide

Flipo, M.Desroses, M.Dirie, B.Carette, X.Leroux, F.Lens, Z.Rucktooa, P.Leroux, F.Piveteau, C.Demirkaya, F.Locht, C.Villeret, V.Christophe, T.Jeon, H.K.Brodin, P.Deprez, B.Baulard, A.Willand, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HTH-type transcriptional regulator EthR
A, B
236Mycobacterium tuberculosisMutation(s): 0 
Gene Names: ethRetaRMT3970Rv3855
Find proteins for P9WMC1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Go to UniProtKB:  P9WMC1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LL4
Query on LL4

Download CCD File 
A, B
4-methyl-1-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}pentan-1-one
C17 H23 N3 O2 S
QWPAQBJBWLSPSH-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
LL4IC50:  900   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 
  • Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 121.56α = 90
b = 121.56β = 90
c = 33.77γ = 90
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-01-11
    Type: Initial release