Download MendeleyStructure of Glutathione S-transferase(PP0183) from Pseudomonas putida in complex with GSH
Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C.To be published.
3PR8 | pdb_00003pr8
3PR8 | pdb_00003pr8
Structure of Glutathione S-transferase(PP0183) from Pseudomonas putida in complex with GSH
- PDB DOI: https://doi.org/10.2210/pdb3PR8/pdb
- Classification: TRANSFERASE
- Organism(s): Pseudomonas putida KT2440
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-11-29 Released: 2010-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.203 (Depositor), 0.211 (DCC)
- R-Value Work: 0.171 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.173 (Depositor)
Starting Model: experimental
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This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutathione S-transferase family protein | 229 | Pseudomonas putida KT2440 | Mutation(s): 0 Gene Names: PP0183, PP_0183 EC: 2.5.1.18 |  | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q88RE7 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GSH Download:Ideal Coordinates CCD File | E [auth A], F [auth B], H [auth C], I [auth D] | Glutathione C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N |  | ||
| EPE Download:Ideal Coordinates CCD File | G [auth B] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Biologically Interesting Molecules (External Reference)
1 Unique| Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_002593 (GSH) Query on PRD_002593 | E [auth A], F [auth B], H [auth C], I [auth D] | Glutathione | Peptide-like / Oxidation-reduction | | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.203 (Depositor), 0.211 (DCC)
- R-Value Work: 0.171 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.173 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.032 | α = 89.92 |
| b = 66.012 | β = 85.55 |
| c = 88.853 | γ = 86.5 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2010-12-22 Deposition Author(s): Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-12-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-12-14
Changes: Non-polymer description - Version 1.3: 2016-09-21
Changes: Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2023-09-06
Changes: Data collection, Database references, Refinement description - Version 1.6: 2023-12-06
Changes: Data collection
