3PFY

The catalytic domain of human OTUD5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.702 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
OTU domain-containing protein 5
A
185Homo sapiensMutation(s): 0 
Gene Names: OTUD5
EC: 3.4.19.12
Find proteins for Q96G74 (Homo sapiens)
Go to Gene View: OTUD5
Go to UniProtKB:  Q96G74
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
UNX
Query on UNX

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Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
PG4
Query on PG4

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Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.702 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.178 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 80.605α = 90.00
b = 80.605β = 90.00
c = 52.263γ = 90.00
Software Package:
Software NamePurpose
SHELXphasing
REFMACrefinement
SHELXmodel building
HKL-2000data reduction
HKL-2000data scaling
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-12-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance