3PFN

Crystal Structure of human NAD kinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.210 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of human NAD kinase

Wang, H.Tempel, W.Wernimont, A.K.Tong, Y.Guan, X.Shen, Y.Li, Y.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Weigelt, J.Park, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NAD kinaseA, B, C, D365Homo sapiensMutation(s): 1 
Gene Names: NADK
EC: 2.7.1.23
Find proteins for O95544 (Homo sapiens)
Explore O95544 
Go to UniProtKB:  O95544
NIH Common Fund Data Resources
PHAROS:  O95544
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download Ideal Coordinates CCD File 
AA [auth B] , AB [auth C] , BA [auth B] , BB [auth C] , CA [auth B] , CB [auth C] , DA [auth B] , DB [auth C] , 
AA [auth B],  AB [auth C],  BA [auth B],  BB [auth C],  CA [auth B],  CB [auth C],  DA [auth B],  DB [auth C],  E [auth A],  EA [auth B],  EB [auth C],  F [auth A],  FA [auth B],  FB [auth C],  G [auth A],  GA [auth B],  GB [auth C],  H [auth A],  HA [auth B],  HB [auth D],  I [auth A],  IA [auth B],  IB [auth D],  J [auth A],  JA [auth B],  JB [auth D],  K [auth A],  KA [auth B],  KB [auth D],  L [auth A],  LA [auth B],  LB [auth D],  M [auth A],  MA [auth B],  MB [auth D],  N [auth A],  NA [auth B],  NB [auth D],  O [auth A],  OA [auth B],  P [auth A],  PA [auth B],  Q [auth A],  QA [auth B],  R [auth A],  RA [auth B],  S [auth A],  SA [auth B],  T [auth A],  TA [auth C],  U [auth A],  UA [auth C],  V [auth A],  VA [auth C],  W [auth A],  WA [auth C],  X [auth A],  XA [auth C],  Y [auth A],  YA [auth C],  Z [auth B],  ZA [auth C]
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, DL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.210 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.095α = 90
b = 133.587β = 90
c = 162.668γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
DMphasing
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
BUSTERrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-11-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-08
    Changes: Refinement description