3P6Y

CF Im25-CF Im68-UGUAA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.229 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of pre-mRNA recognition by the human cleavage factor Im complex

Li, H.Tong, S.Li, X.Shi, H.Gao, Y.Ge, H.Niu, L.Teng, M.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cleavage and polyadenylation specificity factor subunit 5
A, B, E, F, I
A, B, E, F, I, J, M, N
202Homo sapiensMutation(s): 0 
Gene Names: NUDT21CFIM25CPSF25CPSF5
UniProt & NIH Common Fund Data Resources
Find proteins for O43809 (Homo sapiens)
Explore O43809 
Go to UniProtKB:  O43809
PHAROS:  O43809
GTEx:  ENSG00000167005 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO43809
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cleavage and polyadenylation specificity factor subunit 6
C, D, G, H, K
C, D, G, H, K, L, O, P
90Homo sapiensMutation(s): 1 
Gene Names: CPSF6CFIM68
UniProt & NIH Common Fund Data Resources
Find proteins for Q16630 (Homo sapiens)
Explore Q16630 
Go to UniProtKB:  Q16630
PHAROS:  Q16630
GTEx:  ENSG00000111605 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16630
Sequence Annotations
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  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 3
MoleculeChains LengthOrganismImage
5'-R(*UP*GP*UP*AP*A)-3'
Q, R, S, T, U
Q, R, S, T, U, V, W
5N/A
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.229 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.783α = 90
b = 129.419β = 94.01
c = 111.159γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-11-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-11-01
    Changes: Data collection, Database references, Refinement description