Download MendeleyPermutations study of de novo designed symmetric beta-trefoil architecture
Blaber, M., Lee, J.To be published.
3P6I
Crystal structure of Symfoil-4T Permutation #2: de novo designed beta-trefoil architecture with symmetric primary structure
- PDB DOI: https://doi.org/10.2210/pdb3P6I/pdb
- Classification: DE NOVO PROTEIN
- Mutation(s): No
- Deposited: 2010-10-11 Released: 2011-10-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.32 Å
- R-Value Free: 0.178
- R-Value Work: 0.146
- R-Value Observed: 0.148
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| de novo designed beta-trefoil architecture with symmetric primary structure | 142 | N/A | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | B [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.32 Å
- R-Value Free: 0.178
- R-Value Work: 0.146
- R-Value Observed: 0.148
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.901 | α = 90 |
| b = 53.258 | β = 90 |
| c = 84.539 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASES | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-10-12 Deposition Author(s): Blaber, M., Lee, J.
Revision History (Full details and data files)
- Version 1.0: 2011-10-12
Type: Initial release - Version 1.1: 2024-02-21
Changes: Data collection, Database references, Derived calculations
