3P2L

Crystal Structure of ATP-dependent Clp protease subunit P from Francisella tularensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of ATP-dependent Clp protease subunit P from Francisella tularensis

Kim, Y.Zhou, M.Gu, M.Anderson, W.F.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunitA, B, C, D, E, F, G201Francisella tularensis subsp. tularensis SCHU S4Mutation(s): 0 
Gene Names: clpPFTT_0624
EC: 3.4.21.92
UniProt
Find proteins for Q5NH47 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4))
Explore Q5NH47 
Go to UniProtKB:  Q5NH47
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PEG
Query on PEG

Download Ideal Coordinates CCD File 
BA [auth B] , CB [auth F] , DA [auth C] , DB [auth F] , EA [auth C] , GA [auth C] , GB [auth F] , I [auth A] , 
BA [auth B],  CB [auth F],  DA [auth C],  DB [auth F],  EA [auth C],  GA [auth C],  GB [auth F],  I [auth A],  JB [auth G],  K [auth A],  KB [auth G],  LA [auth D],  LB [auth G],  M [auth A],  MA [auth D],  MB [auth G],  OA [auth D],  PB [auth G],  QA [auth D],  TA [auth E],  UA [auth E],  V [auth B],  VA [auth E],  W [auth B],  WA [auth E],  X [auth B]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
PO4
Query on PO4

Download Ideal Coordinates CCD File 
AA [auth B] , AB [auth E] , HB [auth F] , JA [auth C] , NB [auth G] , R [auth A] , RA [auth D] , RB [auth G] , 
AA [auth B],  AB [auth E],  HB [auth F],  JA [auth C],  NB [auth G],  R [auth A],  RA [auth D],  RB [auth G],  T [auth B],  U [auth B]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
EB [auth F] , FA [auth C] , IA [auth C] , J [auth A] , L [auth A] , NA [auth D] , O [auth A] , PA [auth D] , 
EB [auth F],  FA [auth C],  IA [auth C],  J [auth A],  L [auth A],  NA [auth D],  O [auth A],  PA [auth D],  Q [auth A],  QB [auth G],  XA [auth E],  Y [auth B],  YA [auth E],  Z [auth B],  ZA [auth E]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
FB [auth F], HA [auth C], N [auth A], OB [auth G], P [auth A]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
BB [auth F], CA [auth C], H [auth A], IB [auth G], KA [auth D], S [auth B], SA [auth E]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, GL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.523α = 90
b = 128.823β = 90
c = 98.03γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
HKL-3000data collection
HKL-3000phasing
SHELXSphasing
MLPHAREphasing
RESOLVEmodel building
SOLVEphasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
RESOLVEphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-10-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance