3P1M

Crystal structure of human ferredoxin-1 (FDX1) in complex with iron-sulfur cluster


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of human ferredoxin-1 (FDX1) in complex with iron-sulfur cluster

Chaikuad, A.Johansson, C.Krojer, T.Yue, W.W.Phillips, C.Bray, J.E.Pike, A.C.W.Muniz, J.R.C.Vollmar, M.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Kavanagh, K.Oppermann, U.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Adrenodoxin, mitochondrialA, B, C, D, E, F, G, H132Homo sapiensMutation(s): 0 
Gene Names: ADXFDX1
UniProt & NIH Common Fund Data Resources
Find proteins for P10109 (Homo sapiens)
Explore P10109 
Go to UniProtKB:  P10109
PHAROS:  P10109
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download Ideal Coordinates CCD File 
DA [auth G] , HA [auth H] , J [auth A] , M [auth B] , P [auth C] , Q [auth C] , T [auth D] , U [auth D] , 
DA [auth G],  HA [auth H],  J [auth A],  M [auth B],  P [auth C],  Q [auth C],  T [auth D],  U [auth D],  X [auth E]
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
FES
Query on FES

Download Ideal Coordinates CCD File 
CA [auth G], GA [auth H], I [auth A], L [auth B], O [auth C], S [auth D], W [auth E], Z [auth F]FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
BA [auth F], FA [auth G]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
K
Query on K

Download Ideal Coordinates CCD File 
AA [auth F], EA [auth G], IA [auth H], K [auth A], N [auth B], R [auth C], V [auth D], Y [auth E]POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.205 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.576α = 90
b = 76.576β = 90
c = 234.41γ = 120
Software Package:
Software NamePurpose
GDAdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report




Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2010-11-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance