Download Mendeleyfragment based drug design on PKA
Koester, H., Craan, T., Brass, S., Heine, A., Klebe, G.To be published.
3OWP
Human cAMP-dependent protein kinase in complex with an inhibitor
- PDB DOI: https://doi.org/10.2210/pdb3OWP/pdb
- Classification: TRANSFERASE/TRANSFERASE inhibitor
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-09-20 Released: 2011-09-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.211
- R-Value Work: 0.170
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase catalytic subunit alpha | 351 | Homo sapiens | Mutation(s): 0 Gene Names: PKACA, PRKACA EC: 2.7.11.11 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P17612 (Homo sapiens) Explore P17612 Go to UniProtKB: P17612 | |||||
PHAROS: P17612 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P17612 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase inhibitor alpha | 20 | Homo sapiens | Mutation(s): 0 Gene Names: PKIA, PRKACN1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61925 (Homo sapiens) Explore P61925 Go to UniProtKB: P61925 | |||||
PHAROS: P61925 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61925 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2SB Query on 2SB | C [auth A] | (2S)-2-amino-N'-[(1E)-(3-bromo-4-hydroxyphenyl)methylidene]-2-phenylethanehydrazide C15 H14 Br N3 O2 LFYFEEHPORTFLQ-RMNBPEERSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| TPO Query on TPO | A | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.211
- R-Value Work: 0.170
- R-Value Observed: 0.172
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.89 | α = 90 |
| b = 75.66 | β = 90 |
| c = 79.97 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-09-21 Deposition Author(s): Koester, H., Heine, A., Klebe, G.
Revision History (Full details and data files)
- Version 1.0: 2011-09-21
Type: Initial release - Version 1.1: 2012-12-12
Changes: Other - Version 1.2: 2013-03-13
Changes: Other
