3OWC | pdb_00003owc

Crystal structure of GNAT superfamily protein PA2578 from Pseudomonas aeruginosa

• PDB DOI: https://doi.org/10.2210/pdb3OWC/pdb

• Classification: TRANSFERASE
• Organism(s): Pseudomonas aeruginosa PAO1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-09-17 Released: 2010-11-03 
• Deposition Author(s): Majorek, K.A., Chruszcz, M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.212 (Depositor), 0.225 (DCC) 
• R-Value Work: 
  0.176 (Depositor), 0.188 (DCC) 
• R-Value Observed: 
  0.178 (Depositor) 

Literature

Crystal structure of GNAT superfamily protein PA2578 from Pseudomonas aeruginosa

Majorek, K.A., Chruszcz, M., Joachimiak, A., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 44.73 kDa 
• Atom Count: 3,313 
• Modeled Residue Count: 342 
• Deposited Residue Count: 376 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable acetyltransferase	A, B	188	Pseudomonas aeruginosa PAO1	Mutation(s): 0  Gene Names: PA2578 EC: 2.3.1
UniProt
Find proteins for Q9I0Q8 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I0Q8  Go to UniProtKB:  Q9I0Q8

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
COA	C [auth A], G [auth B]	COENZYME A C21 H36 N7 O16 P3 S RGJOEKWQDUBAIZ-IBOSZNHHSA-N
EDO	D [auth A], E [auth A], F [auth A], H [auth B], I [auth B]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.212 (Depositor), 0.225 (DCC) 
• R-Value Work:  0.176 (Depositor), 0.188 (DCC) 
• R-Value Observed: 0.178 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.095	α = 90
b = 71.095	β = 90
c = 97.952	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
BUCCANEER	phasing
MLPHARE	phasing
DM	phasing
ARP/wARP	model building
CCP4	phasing
O	model building
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-11-03 
Deposition Author(s): Majorek, K.A., Chruszcz, M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2010-11-03
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-09-26
  Changes: Structure summary
• Version 1.3: 2012-12-19
  Changes: Structure summary
• Version 1.4: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.5: 2024-11-20
  Changes: Data collection, Structure summary