3OOJ

C1A mutant of E. coli GlmS in complex with glucose-6P and glutamate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

C1A mutant of E. coli GlmS in complex with glucose-6P and glutamate

Mouilleron, S.Badet-Denisot, M.-A.Badet, B.Golinelli-Pimpaneau, B.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glucosamine/fructose-6-phosphate aminotransferase, isomerizingA, B, C, D, E, F, G, H608Escherichia coliMutation(s): 1 
EC: 2.6.1.16
UniProt
Find proteins for P17169 (Escherichia coli (strain K12))
Explore P17169 
Go to UniProtKB:  P17169
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G6P (Subject of Investigation/LOI)
Query on G6P

Download Ideal Coordinates CCD File 
DA [auth F], HA [auth G], J [auth A], LA [auth H], N [auth B], R [auth C], V [auth D], Z [auth E]6-O-phosphono-alpha-D-glucopyranose
C6 H13 O9 P
NBSCHQHZLSJFNQ-DVKNGEFBSA-N
 Ligand Interaction
G6Q (Subject of Investigation/LOI)
Query on G6Q

Download Ideal Coordinates CCD File 
BA [auth E], FA [auth F], JA [auth G], L [auth A], NA [auth H], P [auth B], T [auth C], X [auth D]GLUCOSE-6-PHOSPHATE
C6 H13 O9 P
VFRROHXSMXFLSN-SLPGGIOYSA-N
 Ligand Interaction
GLU
Query on GLU

Download Ideal Coordinates CCD File 
CA [auth F], GA [auth G], I [auth A], KA [auth H], M [auth B], Q [auth C], U [auth D], Y [auth E]GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AA [auth E], EA [auth F], IA [auth G], K [auth A], MA [auth H], O [auth B], S [auth C], W [auth D]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 247.599α = 90
b = 247.599β = 90
c = 630.862γ = 120
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-10-19
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Database references, Derived calculations, Structure summary