3OCM

The crystal structure of a domain from a possible membrane protein of Bordetella parapertussis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.801 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The crystal structure of a domain from a possible membrane protein of Bordetella parapertussis

Tan, K.Tesar, C.Cobb, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative membrane protein
A, B
173Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)Mutation(s): 0 
Find proteins for Q7W867 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253))
Go to UniProtKB:  Q7W867
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
A, B
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.801 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.173 
  • Space Group: P 4 21 2
Unit Cell:
Length (Å)Angle (°)
a = 152.289α = 90.00
b = 152.289β = 90.00
c = 46.888γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
DMmodel building
WARPmodel building
ARPmodel building
HKL-3000data reduction
DMphasing
SHELXDphasing
MLPHAREphasing
HKL-3000data scaling
HKL-3000phasing
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-10-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance