Download MendeleyCrystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
Edwards, T.E., Arakaki, T.L., Sankaran, B.To be published.
3OCF
Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
- PDB DOI: https://doi.org/10.2210/pdb3OCF/pdb
- Classification: LYASE
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-08-09 Released: 2010-08-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.227
- R-Value Work: 0.171
- R-Value Observed: 0.174
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fumarate lyase:Delta crystallin | 478 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: aspA, BAB1_1959 EC: 4.3.1.1 |  | |
UniProt | |||||
Find proteins for Q2YLW1 (Brucella abortus (strain 2308)) Explore Q2YLW1 Go to UniProtKB: Q2YLW1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YLW1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | F [auth A], G [auth A], I [auth B], L [auth D], M [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A], H [auth B], J [auth C], K [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.227
- R-Value Work: 0.171
- R-Value Observed: 0.174
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M33OCF
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.23 | α = 90 |
| b = 86.46 | β = 91.91 |
| c = 105.16 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2010-08-18 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-08-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
